From a single drop of blood, researchers can now simultaneously test for more than 1,000 different strains of viruses that currently or have previously infected a person. Using a new method known as VirScan, researchers from Brigham and Women’s Hospital (BWH) and Harvard Medical School tested for evidence of past viral infections, detecting on average 10 viral species per person. The new work sheds light on the interplay between a person’s immunity and the human virome -- the vast array of viruses that can infect humans – with implications both for the clinic and for the field of immunology. The team reports its findings in Science on June 5.
“VirScan is a little like looking back in time: using this method, we can take a tiny drop of blood and determine what viruses a person has been infected with over the course of many years,” said corresponding author Stephen Elledge, PhD, a principal investigator in the Division of Genetics at BWH and Gregor Mendel Professor of Genetics and of Medicine at Harvard Medical School. “What makes this so unique is the scale: right now, a physician needs to guess what virus might be at play and individually test for it. With VirScan, we can look for virtually all viruses, even rare ones, with a single test.”
VirScan can detect evidence of more than 1,000
Classic blood tests, known as ELISA assays, can only detect one pathogen at a time. Additionally, ELISA assays have not been developed against all viruses, further limiting their usefulness. The team found the sensitivity and specificity of VirScan to be very similar to that of ELISA assays. The tests cost a comparable amount to run.
In the new study, Elledge and his colleagues tested blood samples from almost 600 people from Peru, the United States, South Africa and Thailand. The team developed and used a library of peptides – short protein fragments derived from viruses – representing more than 1,000 viral strains to find evidence of previous viral exposure. Rates of viral exposure varied by age, geographic location and HIV status, but the team found that a small number of peptides were recognized by the vast majority of people’s immune systems. This pattern, suggesting that the immune systems of many individuals are hitting upon the same protein portion in a virus, could have important implications for understanding immunity.
VirScan may also help researchers find correlations between previous exposure to a particular virus and the development of a disease later in life. A connection between Epstein-Barr virus – one of the most common viruses seen in this study – and the risk of certain kinds of cancer is already known. The new method may help reveal other as-yet-unknown connections.
“A viral infection can leave behind an indelible footprint on the immune system,” said Elledge. “Having a simple, reproducible method like VirScan may help us generate new hypotheses and understand the interplay between the virome and the host’s immune system, with implications for a variety of diseases.”
This work was supported by the National Institutes of Health (R01 DE018925-04, R37AI067073, DA033541, AI082630, N01-AI-30024, N01-AI-30024 and N01-AI-15422), the International AIDS Vaccine Initiative (UKZNRSA1001), African Research Chairs Initiative, the Victor Daitz Foundation, the Howard Hughes Medical Institute, the HIVACAT program, CUTHIVAC 241904, TRF Senior Research Scholar, the Thailand Research Fund; the Chulalongkorn University Research Professor Program, Thailand; and the National Science Foundation.